STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0014Transporter, NhaC family (TC 2.A.35); PFAM: Na+/H+ antiporter family; COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461; KEGG: amt:Amet_0694 Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; SPTR: Na+/H+ antiporter NhaC. (550 aa)    
Predicted Functional Partners:
Tlie_0257
KEGG: nth:Nther_0921 Na+/H+ antiporter NhaC; SPTR: Na(+)/H(+) antiporter.
  
     0.758
Tlie_0013
GntR domain protein; PFAM: Ribonuclease R winged-helix domain; FCD domain; COGs: COG2186 Transcriptional regulators; InterPro IPR013668: IPR011711; KEGG: aco:Amico_1772 GntR domain protein; PFAM: GntR domain protein; Ribonuclease R winged-helix domain protein; SPTR: GntR domain protein.
       0.596
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.