STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0044KEGG: tai:Taci_1049 hypothetical protein; SPTR: Putative uncharacterized protein. (203 aa)    
Predicted Functional Partners:
Tlie_0043
Hypothetical protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR012902: IPR001120; KEGG: tai:Taci_1050 hypothetical protein; SPTR: Putative pilin domain protein.
       0.773
Tlie_0042
Hypothetical protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR012902: IPR001120; KEGG: tai:Taci_1051 hypothetical protein; SPTR: Predicted protein.
       0.705
Tlie_0045
Pyrrolo-quinoline quinone repeat-containing protein; PFAM: PQQ enzyme repeat; TIGRFAM: conserved repeat domain; COGs: COG3419 Tfp pilus assembly protein tip-associated adhesin PilY1; InterPro IPR018391: IPR002372; KEGG: tai:Taci_1048 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; SPTR: Type IV pilus assembly protein PilY1.
       0.669
Tlie_0046
KEGG: ptm:GSPATT00020220001 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.668
Tlie_0047
Ferroxidase; Iron-storage protein.
       0.437
Tlie_0041
Phosphate ABC transporter substrate-binding protein, PhoT family; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: phosphate binding protein; COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR011862: IPR006059; KEGG: aco:Amico_1678 phosphate binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: Phosphate binding protein; TIGRFAM: phosphate binding protein.
       0.409
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.