STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0063Protein of unknown function DUF195; PFAM: RmuC family; COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: dap:Dacet_1804 hypothetical protein; PFAM: protein of unknown function DUF195; SPTR: Putative uncharacterized protein. (399 aa)    
Predicted Functional Partners:
Tlie_0064
Putative PAS/PAC sensor protein; PFAM: HD domain; PAS fold; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: PAS domain S-box; uncharacterized domain HDIG; COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterProIPR001638: IPR000014: IPR003607: IPR006675: IPR 013656: IPR006674; KEGG: tle:Tlet_1338 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; extracellular solute-binding protein family 3; PAS fold-4 domain protein; SMART: extracellular solute-binding protein family 3; PAS domain c [...]
  
    0.778
Tlie_0062
Hypothetical protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR000983: IPR012902: IPR001120; KEGG: tai:Taci_1052 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.529
Tlie_0065
KEGG: ava:Ava_4088 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.513
Tlie_0059
PFAM: Serine dehydratase alpha chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; COGs: COG1760 L-serine deaminase; InterPro IPR004642: IPR005130; KEGG: aco:Amico_0078 L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; PRIAM: L-serine ammonia-lyase; SPTR: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit.
       0.435
Tlie_0060
PFAM: ACT domain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; COGs: COG1760 L-serine deaminase; InterPro IPR004643: IPR005131: IPR002912; KEGG: tai:Taci_0266 L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: serine dehydratase beta chain; amino acid-binding ACT domain protein; PRIAM: L-serine ammonia-lyase; SPTR: L-serine dehydratase, iron-sulfur-dependent, beta subunit; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit.
       0.435
Tlie_0057
PFAM: SNARE associated Golgi protein; COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: aco:Amico_1637 SNARE associated Golgi protein-related protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein-related protein.
       0.411
Tlie_0061
Putative PAS/PAC sensor protein; PFAM: PAS fold; TIGRFAM: PAS domain S-box; COGs: COG2202 FOG: PAS/PAC domain; InterPro IPR000014: IPR001610: IPR013656: IPR000700; KEGG: mpd:MCP_1856 putative histidine kinase; PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; SPTR: Putative histidine kinase; TIGRFAM: PAS sensor protein.
       0.402
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.