STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0078PFAM: Flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ; InterPro IPR012823; KEGG: ehi:EHI_093850 Viral A-type inclusion protein repeat; SPTR: Viral A-type inclusion protein repeat, putative; TIGRFAM: flagellar export protein FliJ. (147 aa)    
Predicted Functional Partners:
Tlie_0074
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
       0.773
Tlie_0075
PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG; COGs: COG1536 Flagellar motor switch protein; InterPro IPR000090: IPR006668; KEGG: tai:Taci_1336 flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; MgtE intracellular region; SPTR: Flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG.
       0.773
Tlie_0076
PFAM: Flagellar assembly protein FliH; COGs: COG1317 Flagellar biosynthesis/type III secretory pathway protein; InterPro IPR018035; KEGG: tai:Taci_1335 flagellar assembly protein FliH; PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; SPTR: Flagellar assembly protein FliH.
       0.773
Tlie_0077
Type III secretion system ATPase, FliI/YscN; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI; COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; InterProIPR003593: IPR005714: IPR020003: IPR004100: IPR 000194; KEGG: tai:Taci_1334 ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; SPTR: ATPase, FliI/YscN family; TIGRFAM: ATPase, FliI/YscN family.
       0.773
Tlie_0079
PFAM: Transglycosylase SLT domain; COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR000189: IPR008258; KEGG: pth:PTH_0856 hypothetical protein; PFAM: Lytic transglycosylase catalytic; SPTR: Putative lytic murein transglycosylase.
       0.718
fliE
PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE; InterPro IPR001624; KEGG: tnp:Tnap_1437 flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; SPTR: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE.
       0.664
Tlie_0080
PFAM: Protein of unknown function (DUF342); COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: tai:Taci_1305 protein of unknown function DUF342; PFAM: protein of unknown function DUF342; SPTR: Putative uncharacterized protein.
       0.652
Tlie_0072
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.563
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
       0.556
Tlie_0082
OmpA/MotB domain protein; PFAM: OmpA family; COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: tai:Taci_1325 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: Flagellar motor protein MotB.
       0.520
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.