STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0091Flagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins; COGs: COG4786 Flagellar basal body rod protein; InterPro IPR020013: IPR019776: IPR001444: IPR010930; KEGG: tai:Taci_1148 protein of unknown function DUF1078 domain protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: Flagellar basal-body rod protein FlgG; TIGRFAM: fagellar hook-basal body protein. (253 aa)    
Predicted Functional Partners:
Tlie_0090
Flagellar basal-body rod protein FlgC; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC; COGs: COG1558 Flagellar basal body rod protein; InterPro IPR006299: IPR019776: IPR001444: IPR010930; KEGG: tai:Taci_1339 flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: Flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
 
 0.997
Tlie_0089
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.979
Tlie_0092
Flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN; COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR001172: IPR012826: IPR001543; KEGG: tjr:TherJR_1529 CheC, inhibitor of MCP methylation / FliN fusion protein; PFAM: surface presentation of antigens (SPOA) protein; SPTR: CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN.
 
 
 0.979
Tlie_0068
PFAM: Flagellar hook capping protein; COGs: COG1843 Flagellar hook capping protein; InterPro IPR005648; KEGG: hor:Hore_16820 flagellar hook capping protein; PFAM: flagellar hook capping protein; SPTR: Flagellar hook capping protein.
 
 
 0.976
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
 0.976
Tlie_0074
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
 
 0.972
Tlie_0112
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
 
 0.971
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
 
 0.965
Tlie_0075
PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG; COGs: COG1536 Flagellar motor switch protein; InterPro IPR000090: IPR006668; KEGG: tai:Taci_1336 flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; MgtE intracellular region; SPTR: Flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG.
 
 
 0.962
Tlie_0086
PFAM: MotA/TolQ/ExbB proton channel family; COGs: COG1291 Flagellar motor component; InterPro IPR000540: IPR002898; KEGG: tai:Taci_1326 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel.
 
  
 0.957
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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