STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0099CheC domain protein; PFAM: CheC-like family; InterPro IPR007597; KEGG: tai:Taci_0308 hypothetical protein; PFAM: CheC domain protein; SPTR: Putative uncharacterized protein. (166 aa)    
Predicted Functional Partners:
Tlie_0097
PFAM: Response regulator receiver domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: gtn:GTNG_1085 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Two-component response regulator.
  
 
 0.907
Tlie_1854
PFAM: GGDEF domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain; COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789: IPR000014: IPR000160: IPR013767; KEGG: tit:Thit_0615 response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; response regulator receiver; PAS fold domain protein; SMART: GGDEF domain containing protein; response regulator receiver; PAS domain containing protein; SPTR: Response regulator r [...]
   
 
 0.887
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
       0.632
Tlie_0101
PFAM: Bacterial export proteins, family 3; COGs: COG1987 Flagellar biosynthesis pathway component FliQ; InterPro IPR002191; KEGG: tai:Taci_1318 export protein FliQ family 3; PFAM: export protein FliQ family 3; SPTR: Export protein FliQ family 3.
       0.599
Tlie_0102
Type III secretion system inner membrane R protein; PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR; COGs: COG1684 Flagellar biosynthesis pathway component FliR; InterPro IPR002010; KEGG: tai:Taci_1317 flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; SPTR: Type III secretion system inner membrane R protein.
       0.582
Tlie_0098
Metal dependent phosphohydrolase; PFAM: HD domain; COGs: COG2206 HD-GYP domain; InterPro IPR003607: IPR006674; KEGG: bpf:BpOF4_05010 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase.
  
    0.526
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
Server load: medium (70%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.