STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0178COGs: COG1566 Multidrug resistance efflux pump; KEGG: tai:Taci_0165 multidrug resistance efflux pump-like protein; SPTR: Putative uncharacterized protein. (349 aa)    
Predicted Functional Partners:
Tlie_0179
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; KEGG: tai:Taci_0164 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.952
Tlie_0177
PFAM: GGDEF domain; KEGG: tai:Taci_0166 response regulator receiver protein; SPTR: Response regulator receiver protein.
 
  
 0.934
Tlie_0176
PFAM: Glycosyl transferase family 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: tai:Taci_0167 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2.
 
  
 0.928
Tlie_0435
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: aco:Amico_0302 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein.
  
 
 0.793
Tlie_0805
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: aco:Amico_0486 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein.
  
 
 0.793
Tlie_1636
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: aco:Amico_0486 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Type I secretion outer membrane protein.
  
 
 0.793
Tlie_1639
Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sat:SYN_01995 export ABC transporter permease protein; PFAM: protein of unknown function DUF214; SPTR: Export ABC transporter permease protein.
  
  
 0.775
hisI
PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496: IPR008179: IPR021130; KEGG: aco:Amico_0677 phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; SPTR: Phosphoribosyl-ATP diphosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; In the N-terminal section; belongs to the PRA-CH family.
  
    0.701
Tlie_0180
TIGRFAM: iron-sulfur cluster binding protein, putative; COGs: COG1600 Uncharacterized Fe-S protein; InterPro IPR017900: IPR017896; KEGG: mru:mru_1711 4Fe-4S binding domain-containing protein; SPTR: Iron-sulfur cluster binding protein.
       0.538
Tlie_0181
Diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000014: IPR000160: IPR013767: IPR000700; KEGG: sat:SYN_02543 PAS sensory box/GGDEF family protein; PFAM: GGDEF domain containing protein; PAS fold domain protein; SMART: GGDEF domain containing protein; PAS domain containing protein; SPTR: Diguanylate cyclase with PAS/PAC sensor; TIGRFAM: diguanylate cyclase; PAS sensor protein.
  
  
 0.497
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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