STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0210PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC; InterPro IPR011538: IPR019554: IPR017054; KEGG: drm:Dred_1302 respiratory-chain NADH dehydrogenase domain-containing protein; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; SPTR: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit. (444 aa)    
Predicted Functional Partners:
Tlie_1199
PFAM: 4Fe-4S binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR017900: IPR017896; KEGG: aco:Amico_1262 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
  
 
 0.977
Tlie_0211
Microcompartments protein; PFAM: BMC domain; COGs: COG4577 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR000249: IPR011238; KEGG: ckr:CKR_0770 hypothetical protein; PFAM: microcompartments protein; SPTR: Bacterial microcompartments protein.
 
  
 0.955
Tlie_0208
ATP/cobalamin adenosyltransferase; PFAM: Domain of unknown function (DUF336); Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; COGs: COG2096 conserved hypothetical protein; InterPro IPR017858: IPR002779: IPR005624; KEGG: tjr:TherJR_0629 ATP/cobalamin adenosyltransferase; PFAM: protein of unknown function DUF336; cobalamin adenosyltransferase; SPTR: ATP/cobalamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase.
 
 
 
 0.877
Tlie_0204
PFAM: Cell division protein FtsA; TIGRFAM: ethanolamine utilization protein EutJ family protein; COGs: COG4820 Ethanolamine utilization protein possible chaperonin; InterPro IPR013366: IPR018484; KEGG: tjr:TherJR_0626 ethanolamine utilization protein EutJ family protein; PFAM: Carbohydrate kinase, FGGY-like; SPTR: Ethanolamine utilization protein EutJ; TIGRFAM: ethanolamine utilization protein EutJ family protein.
 
     0.832
Tlie_0209
PFAM: Aldehyde dehydrogenase family; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590: IPR012408; KEGG: tjr:TherJR_0630 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: CoA-dependent propionaldehyde dehydrogenase.
 
   
 0.826
Tlie_1071
Hypothetical protein; PFAM: 4Fe-4S binding domain; Domain of unknown function (DUF362); COGs: COG2006 conserved hypothetical protein; InterPro IPR017900: IPR017896; KEGG: mpd:MCP_1114 hypothetical protein; SPTR: Putative iron-sulfur cluster-binding protein.
   
 
 0.780
Tlie_0207
PFAM: Ethanolamine utilisation protein EutN/carboxysome; COGs: COG4576 Carbon dioxide concentrating mechanism/carboxysome shell protein; InterPro IPR004992; KEGG: cbe:Cbei_4055 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; SPTR: Carbon dioxide concentrating mechanism protein CcmL.
 
   
 0.771
Tlie_0882
InterPro IPR017900: IPR017896; KEGG: aco:Amico_1019 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
 
 0.740
Tlie_0203
Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
     
 0.645
Tlie_0205
Hypothetical protein; KEGG: ava:Ava_4746 amino acid adenylation; SPTR: Putative uncharacterized protein.
       0.620
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.