STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0330Permease; PFAM: Predicted permease; COGs: COG0701 permease; InterPro IPR005524; KEGG: tai:Taci_1478 permease; PFAM: permease; SPTR: Permease. (389 aa)    
Predicted Functional Partners:
Tlie_0329
TIGRFAM: small redox-active disulfide protein 2; InterPro IPR005243; KEGG: aco:Amico_0061 redox-active disulfide protein 2; SPTR: Redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2.
 
  
 0.894
Tlie_0331
PFAM: BFD-like [2Fe-2S] binding domain; InterPro IPR007419; KEGG: glo:Glov_2254 BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD domain protein [2Fe-2S]-binding domain protein; SPTR: BFD domain protein (2Fe-2S)-binding domain protein.
       0.658
Tlie_0332
Protein of unknown function DUF6 transmembrane; PFAM: EamA-like transporter family; InterPro IPR000620; KEGG: ckr:CKR_0613 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative membrane protein.
  
    0.535
Tlie_0328
PFAM: Bacterial regulatory protein, arsR family; InterPro IPR001845; KEGG: dba:Dbac_1905 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, ArsR family.
  
  
 0.531
Tlie_0333
PFAM: Major Facilitator Superfamily; InterPro IPR011701: IPR005829; KEGG: aco:Amico_1812 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1.
  
    0.524
Tlie_1777
Redox-active disulfide protein 2; PFAM: Bacterial regulatory protein, arsR family; TIGRFAM: small redox-active disulfide protein 2; InterPro IPR005243: IPR001845; KEGG: tai:Taci_1479 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, ArsR family; TIGRFAM: redox-active disulfide protein 2.
 
  
 0.500
Tlie_0326
Hypothetical protein; KEGG: shn:Shewana3_3661 TPR repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
       0.455
Tlie_0327
PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; COGs: COG1489 DNA-binding protein stimulates sugar fermentation; InterPro IPR005224; KEGG: hmo:HM1_3020 sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; SPTR: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; Belongs to the SfsA family.
       0.455
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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