STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0331PFAM: BFD-like [2Fe-2S] binding domain; InterPro IPR007419; KEGG: glo:Glov_2254 BFD domain protein (2Fe-2S)-binding domain protein; PFAM: BFD domain protein [2Fe-2S]-binding domain protein; SPTR: BFD domain protein (2Fe-2S)-binding domain protein. (90 aa)    
Predicted Functional Partners:
Tlie_0049
Rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin; COGs: COG1773 Rubredoxin; InterPro IPR001052: IPR018527: IPR004039; KEGG: tme:Tmel_1197 rubredoxin-type Fe(Cys)4 protein; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin.
  
 
 0.916
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.742
Tlie_0330
Permease; PFAM: Predicted permease; COGs: COG0701 permease; InterPro IPR005524; KEGG: tai:Taci_1478 permease; PFAM: permease; SPTR: Permease.
       0.658
Tlie_0333
PFAM: Major Facilitator Superfamily; InterPro IPR011701: IPR005829; KEGG: aco:Amico_1812 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1.
     
 0.599
Tlie_0332
Protein of unknown function DUF6 transmembrane; PFAM: EamA-like transporter family; InterPro IPR000620; KEGG: ckr:CKR_0613 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative membrane protein.
       0.598
Tlie_0329
TIGRFAM: small redox-active disulfide protein 2; InterPro IPR005243; KEGG: aco:Amico_0061 redox-active disulfide protein 2; SPTR: Redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2.
       0.463
Tlie_0225
Flavodoxin/nitric oxide synthase; PFAM: Flavodoxin; Metallo-beta-lactamase superfamily; COGs: COG0426 flavoprotein; InterPro IPR001226: IPR008254: IPR016440; KEGG: dal:Dalk_2373 beta-lactamase domain protein; PFAM: flavodoxin/nitric oxide synthase; SPTR: Beta-lactamase domain protein.
  
  
 0.448
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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