STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0341Transposase IS200-family protein; PFAM: Transposase IS200 like; COGs: COG1943 Transposase and inactivated derivatives; InterPro IPR002686; KEGG: gwc:GWCH70_3001 transposase IS200-family protein; PFAM: transposase IS200-family protein; SPTR: Transposase IS200-family protein. (132 aa)    
Predicted Functional Partners:
Tlie_0342
Transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959: IPR010095; KEGG: gwc:GWCH70_3000 transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: Transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB family.
 
  
 0.950
Tlie_0340
PFAM: Transposase, Mutator family; COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: slp:Slip_1151 transposase mutator type; PFAM: transposase mutator type; SPTR: Transposase mutator type.
       0.540
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.