STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0352PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: aco:Amico_1777 extracellular solute-binding protein family 5; PFAM: extracellular solute-binding protein family 5; SPTR: Extracellular solute-binding protein family 5. (561 aa)    
Predicted Functional Partners:
Tlie_0351
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: aco:Amico_1778 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component.
 
 0.999
Tlie_0350
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: aco:Amico_1779 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component.
 
 0.998
Tlie_0349
PFAM: ABC transporter; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: aco:Amico_1780 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein.
 
 
 0.996
Tlie_0348
PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR003439: IPR013563: IPR003593: IPR010066: IPR 017871; KEGG: aco:Amico_1781 ABC transporter related protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: Dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subu [...]
 
  
 0.970
Tlie_1756
PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR019752: IPR002880; KEGG: aco:Amico_1450 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
    0.718
Tlie_0353
PFAM: PHP domain; COGs: COG1796 DNA polymerase IV (family X); InterProIPR004013: IPR002054: IPR003583: IPR003141: IPR 002008; KEGG: ttr:Tter_1075 PHP domain protein; PFAM: PHP domain protein; SMART: DNA polymerase X; Helix-hairpin-helix DNA-binding class 1; phosphoesterase PHP domain protein; SPTR: Cell division topological specificity factor MinE.
       0.527
Tlie_1195
PFAM: Radical SAM superfamily; B12 binding domain; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638: IPR007197; KEGG: aco:Amico_0326 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein.
  
     0.503
Tlie_0570
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: aco:Amico_1487 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyltransferase, family 1.
  
   
 0.479
Tlie_0354
PFAM: Cupin domain; COGs: COG0662 Mannose-6-phosphate isomerase; InterPro IPR013096; KEGG: tai:Taci_1646 cupin 2 conserved barrel domain protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2 conserved barrel domain protein.
       0.476
Tlie_0604
PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein MobB; COGs: COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; KEGG: aco:Amico_0585 molybdopterin-guanine dinucleotide biosynthesis protein-like protein; SPTR: Molybdopterin-guanine dinucleotide biosynthesis protein-like protein.
 
   
 0.446
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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