STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0380Protein of unknown function DUF6 transmembrane; PFAM: EamA-like transporter family; InterPro IPR000620; KEGG: tte:TTE2629 DMT family permease; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative integral membrane protein DUF6. (306 aa)    
Predicted Functional Partners:
Tlie_0379
PFAM: Choline/Carnitine o-acyltransferase; InterPro IPR000542; KEGG: sse:Ssed_1774 carnitine O-acetyltransferase; PFAM: acyltransferase ChoActase/COT/CPT family; PRIAM: Carnitine O-acetyltransferase; SPTR: Carnitine O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family.
       0.572
Tlie_0378
Hypothetical protein; KEGG: pdi:BDI_0627 cytochrome c biogenesis protein; SPTR: Putative uncharacterized protein.
       0.514
Tlie_1665
Protein of unknown function DUF6 transmembrane; PFAM: EamA-like transporter family; InterPro IPR000620; KEGG: drm:Dred_2925 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative membrane protein.
  
     0.512
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.