STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0457KEGG: adg:Adeg_1238 integrase catalytic region; SPTR: Integrase catalytic region. (100 aa)    
Predicted Functional Partners:
Tlie_0458
Hypothetical protein; TIGRFAM: DNA binding domain, excisionase family; KEGG: deg:DehalGT_0071 phage transcriptional regulator, AlpA; SPTR: Phage transcriptional regulator, AlpA.
  
    0.494
Tlie_0459
PFAM: Protein of unknown function (DUF499); KEGG: mca:MCA2686 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.463
Tlie_0460
KEGG: pph:Ppha_2128 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.463
Tlie_0461
PFAM: Protein of unknown function (DUF1156); COGs: COG1743 Adenine-specific DNA methylase containing a Zn-ribbon; InterPro IPR009537: IPR002052; KEGG: vei:Veis_0099 hypothetical protein; PFAM: protein of unknown function DUF1156; SPTR: Putative uncharacterized protein.
       0.400
Tlie_0462
KEGG: vei:Veis_0100 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.400
Tlie_0463
PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR000330: IPR001650: IPR014021: IPR014001; KEGG: mpo:Mpop_3098 helicase domain protein; PFAM: helicase domain protein; SNF2-related protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Helicase domain protein.
       0.400
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.