STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0481Lysine exporter protein (LYSE/YGGA); PFAM: LysE type translocator; InterPro IPR001123; KEGG: cli:Clim_1754 lysine exporter protein (LysE/YggA); PFAM: Lysine exporter protein (LYSE/YGGA); SPTR: Lysine exporter protein (LYSE/YGGA). (227 aa)    
Predicted Functional Partners:
Tlie_0482
PFAM: Substrate binding domain of ABC-type glycine betaine transport system; COGs: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); InterPro IPR007210; KEGG: yen:YE2865 putative substrate-binding transport protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SPTR: Substrate-binding region of ABC-type glycine betaine transport system.
       0.701
Tlie_0483
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: yen:YE2864 putative ABC transport integral membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component.
       0.701
Tlie_0484
PFAM: ABC transporter; CBS domain; COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterPro IPR003439: IPR000644: IPR003593: IPR017871; KEGG: tra:Trad_1572 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Glycine betaine/L-proline ABC transporter, ATPase subunit.
       0.701
Tlie_0485
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: bmj:BMULJ_05007 osmoprotectant transport system permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Putative ABC transporter system permease.
       0.701
Tlie_0117
CheC, inhibitor of MCP methylation; PFAM: CheC-like family; COGs: COG1776 Chemotaxis protein CheC inhibitor of MCP methylation; InterPro IPR007597; KEGG: tai:Taci_1309 CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; SPTR: CheC, inhibitor of MCP methylation.
    
   0.583
Tlie_0480
PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750: IPR003916; KEGG: hwa:HQ1682A putative monovalent cation/H+ antiporter subunit D; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH dehydrogenase.
       0.545
Tlie_0486
PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: cbh:CLC_1475 alcohol dehydrogenase, iron-containing; PFAM: iron-containing alcohol dehydrogenase; SPTR: Alcohol dehydrogenase, iron-containing.
  
    0.455
Tlie_0473
PFAM: Na+/H+ ion antiporter subunit; COGs: COG1863 Multisubunit Na+/H+ antiporter MnhE subunit; InterPro IPR002758; KEGG: kol:Kole_0564 cation antiporter; PFAM: cation antiporter; SPTR: Putative Na+/H+ ion antiporter subunit.
       0.424
Tlie_0474
PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro IPR007208; KEGG: hor:Hore_12110 multiple resistance and pH regulation protein F; PFAM: multiple resistance and pH regulation protein F; SPTR: Na+/H+ antiporter, MnhF component.
       0.424
Tlie_0475
PFAM: Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; COGs: COG1320 Multisubunit Na+/H+ antiporter MnhG subunit; InterPro IPR005133; KEGG: hor:Hore_12100 monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; SPTR: Na+/H+ antiporter, MnhG component; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit.
       0.424
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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