STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0563Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: tai:Taci_1278 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: Glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family. (403 aa)    
Predicted Functional Partners:
Tlie_0562
PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670: IPR018211; KEGG: tai:Taci_1279 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Iron-containing alcohol dehydrogenase.
      0.810
Tlie_0565
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: aco:Amico_1488 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Putative glycosyltransferase.
  
  
 0.803
Tlie_0560
KpsF/GutQ family protein; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein; COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR001347: IPR000644: IPR004800; KEGG: aco:Amico_1493 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; PRIAM: Arabinose-5-phosphate isomerase; SMART: CBS domain containing protein; SPTR: KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; Belongs to the SIS family. GutQ/KpsF subfamily.
  
 
 0.801
Tlie_0564
PFAM: Protein of unknown function (DUF1022); COGs: COG3660 nucleoside-diphosphate-sugar epimerase; InterPro IPR009367; KEGG: aco:Amico_1489 protein of unknown function DUF1022; PFAM: protein of unknown function DUF1022; SPTR: Putative uncharacterized protein.
       0.783
Tlie_1061
PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: aco:Amico_0891 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Oxidoreductase domain protein.
  
 0.777
Tlie_1827
PFAM: Polysaccharide biosynthesis protein; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: swo:Swol_0128 hypothetical protein; PFAM: polysaccharide biosynthesis protein CapD; SPTR: Putative uncharacterized protein.
 
  
 0.769
Tlie_0561
Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
       0.761
Tlie_0566
PFAM: Glycosyltransferase family 9 (heptosyltransferase); COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: tai:Taci_1703 glycosyl transferase family 9; PFAM: glycosyl transferase family 9; SPTR: Putative lipopolysaccharide biosynthesis protein.
     
 0.743
Tlie_1237
PFAM: Nucleotidyl transferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR005835; KEGG: aco:Amico_1360 nucleotidyl transferase; PFAM: Nucleotidyl transferase; SPTR: Nucleotidyl transferase family protein.
  
  
 0.709
Tlie_0556
PFAM: ABC transporter transmembrane region; ABC transporter; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR001140: IPR003439: IPR017940: IPR003593: IPR 017871; KEGG: aco:Amico_1496 ABC transporter related protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter related protein.
  
  
 0.707
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.