STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0585PFAM: Protein of unknown function (DUF1239); KEGG: aco:Amico_1471 hypothetical protein; SPTR: Putative uncharacterized protein. (178 aa)    
Predicted Functional Partners:
Tlie_0594
PFAM: ABC transporter; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: aco:Amico_0576 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein.
     
  0.900
Tlie_0586
PFAM: OstA-like protein; COGs: COG1452 Organic solvent tolerance protein OstA; InterPro IPR005653; KEGG: aco:Amico_1470 OstA family protein; PFAM: OstA family protein; SPTR: OstA family protein.
       0.805
ddl
D-alanine/D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.773
Tlie_0583
KEGG: aco:Amico_1473 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.722
Tlie_0584
KEGG: aco:Amico_1472 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.720
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
       0.681
Tlie_0581
PFAM: Peptidase family M23; LysM domain; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR018392: IPR016047: IPR002482; KEGG: aco:Amico_1475 peptidase M23; PFAM: Peptidase M23; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Peptidase M23.
       0.451
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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