STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0679PFAM: Cobalt transport protein; COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: aco:Amico_0660 cobalt transport protein; PFAM: cobalt transport protein; SPTR: Cobalt transport protein. (270 aa)    
Predicted Functional Partners:
Tlie_0677
PFAM: ABC transporter; Cobalt ATP-binding cassette C terminal; TIGRFAM: cobalt transport protein ATP-binding subunit; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR017871: IPR003439: IPR003593; KEGG: tai:Taci_1153 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein.
 0.999
ecfA
Cobalt ABC transporter, ATPase subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
Tlie_1644
PFAM: ABC transporter; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: aco:Amico_0063 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Metal ABC transporter, nickel uptake transporter family, ATP-binding protein.
 
 0.994
Tlie_1870
PFAM: BioY family; COGs: COG1268 conserved hypothetical protein; InterPro IPR003784; KEGG: aco:Amico_1847 BioY protein; PFAM: BioY protein; SPTR: BioY protein.
 
 0.987
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
  
 0.975
Tlie_1641
Cobalamin (vitamin B12) biosynthesis CbiM protein; PFAM: Cobalt uptake substrate-specific transmembrane region; COGs: COG0310 ABC-type Co2+ transport system permease component; InterPro IPR002751; KEGG: aco:Amico_0066 cobalamin (vitamin B12) biosynthesis CbiM protein; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; SPTR: Cobalamin (Vitamin B12) biosynthesis CbiM protein.
  
 
 0.950
Tlie_0577
PFAM: Protein of unknown function (DUF1393); COGs: COG4720 membrane protein; KEGG: aco:Amico_1479 protein of unknown function DUF1393; SPTR: Putative uncharacterized protein.
 
 
 0.912
rplQ
PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17; COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: aco:Amico_0657 ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17.
     
 0.829
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
    0.828
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
  
 0.771
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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