STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0684PFAM: Protein of unknown function (DUF3084); COGs: COG4372 Uncharacterized protein with the myosin-like domain; KEGG: aco:Amico_0665 uncharacterized protein with the myosin-like protein domain; SPTR: Putative uncharacterized protein. (392 aa)    
Predicted Functional Partners:
Tlie_0686
GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; InterPro IPR000182; KEGG: aco:Amico_0667 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase.
 
     0.810
Tlie_0552
PFAM: Predicted permease YjgP/YjgQ family; COGs: COG0795 permease; InterPro IPR005495; KEGG: aco:Amico_1500 permease YjgP/YjgQ family protein; PFAM: permease YjgP/YjgQ family protein; SPTR: Permease YjgP/YjgQ family protein.
 
     0.799
Tlie_0412
KEGG: aco:Amico_0275 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.787
Tlie_0572
S-layer domain-containing protein; PFAM: S-layer homology domain; InterPro IPR001119; KEGG: aco:Amico_1484 S-layer domain protein; PFAM: S-layer domain-containing protein; SPTR: S-layer domain protein.
 
     0.780
Tlie_0573
S-layer domain-containing protein; PFAM: S-layer homology domain; InterPro IPR001119; KEGG: aco:Amico_1484 S-layer domain protein; PFAM: S-layer domain-containing protein; SPTR: S-layer protein.
 
     0.780
Tlie_0685
KEGG: aco:Amico_0666 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.779
Tlie_0583
KEGG: aco:Amico_1473 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.775
Tlie_0545
PFAM: Surface antigen variable number repeat; Surface antigen; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184; KEGG: aco:Amico_1507 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Membrane protein, OMP85 family.
 
     0.774
Tlie_0690
Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like); InterPro IPR005632; KEGG: tai:Taci_0682 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH).
  
     0.773
Tlie_1087
Hypothetical protein; PFAM: SpoIVB peptidase S55; KEGG: aco:Amico_1054 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.772
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.