STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0689PFAM: Protein of unknown function (DUF3343); KEGG: tai:Taci_0681 hypothetical protein; SPTR: Putative uncharacterized protein. (72 aa)    
Predicted Functional Partners:
Tlie_0690
Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like); InterPro IPR005632; KEGG: tai:Taci_0682 outer membrane chaperone Skp (OmpH); PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH).
 
     0.644
Tlie_0586
PFAM: OstA-like protein; COGs: COG1452 Organic solvent tolerance protein OstA; InterPro IPR005653; KEGG: aco:Amico_1470 OstA family protein; PFAM: OstA family protein; SPTR: OstA family protein.
  
     0.486
Tlie_0319
Hypothetical protein; PFAM: Domain of unknown function DUF83; COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: aco:Amico_1643 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.472
Tlie_0564
PFAM: Protein of unknown function (DUF1022); COGs: COG3660 nucleoside-diphosphate-sugar epimerase; InterPro IPR009367; KEGG: aco:Amico_1489 protein of unknown function DUF1022; PFAM: protein of unknown function DUF1022; SPTR: Putative uncharacterized protein.
  
     0.465
Tlie_1289
PFAM: Glycine reductase complex selenoprotein A; InterPro IPR006812; KEGG: aco:Amico_1396 glycine reductase; PFAM: glycine reductase complex selenoprotein A; SPTR: Glycine reductase.
  
     0.463
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.