STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0857Hypothetical protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR001120: IPR012902: IPR000983; KEGG: tai:Taci_1052 hypothetical protein; SPTR: Putative uncharacterized protein. (155 aa)    
Predicted Functional Partners:
Tlie_0856
PFAM: Bacterial type II secretion system protein F domain; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR001992: IPR018076: IPR003004; KEGG: tai:Taci_1053 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Pilin biogenesis protein.
 
  
 0.923
Tlie_0062
Hypothetical protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR000983: IPR012902: IPR001120; KEGG: tai:Taci_1052 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 
0.913
Tlie_0854
General secretory pathway protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E; COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482: IPR007831: IPR013369; KEGG: tai:Taci_1055 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SPTR: Type II secretion system protein E; TIGRFAM: general secretory pathway protein E.
 
 
 0.893
Tlie_0858
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM; COGs: COG4972 Tfp pilus assembly protein ATPase PilM; KEGG: tai:Taci_1047 Tfp pilus assembly protein ATPase PilM-like protein; SPTR: Putative type IV pilus assembly protein PilM.
 
  
 0.724
Tlie_0862
PFAM: Bacterial type II and III secretion system protein; COGs: COG4796 Type II secretory pathway component HofQ; InterPro IPR011662: IPR005644: IPR004846: IPR001775; KEGG: tai:Taci_1043 type II and III secretion system protein; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; SPTR: Putative bacterial type II/III secretion system short domain protein.
 
   
 0.706
Tlie_0859
PFAM: Fimbrial assembly protein (PilN); InterPro IPR007813; KEGG: tai:Taci_1046 fimbrial assembly family protein; PFAM: Fimbrial assembly family protein; SPTR: Putative uncharacterized protein.
  
  
 0.648
Tlie_0861
KEGG: tai:Taci_1044 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.604
Tlie_0860
KEGG: hor:Hore_06070 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.603
Tlie_1525
PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family; COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627: IPR000045; KEGG: tai:Taci_1561 peptidase A24A domain protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; SPTR: Peptidase A24A domain protein.
 
  
 0.577
Tlie_0855
Pilus retraction ATPase PilT; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482: IPR006321: IPR003593; KEGG: tai:Taci_1054 twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; TIGRFAM: twitching motility protein.
 
  
 0.568
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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