STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_0937Integrase catalytic region; PFAM: Integrase core domain; InterPro IPR001584; KEGG: adg:Adeg_0194 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase catalytic region. (354 aa)    
Predicted Functional Partners:
Tlie_0938
Hypothetical protein.
       0.773
Tlie_0936
PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA); COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616: IPR008532; KEGG: aco:Amico_0959 fibronectin-binding A domain protein; PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; SPTR: Fibronectin-binding A domain protein.
       0.536
Tlie_0939
Integrase catalytic region; PFAM: Integrase core domain; InterPro IPR001584; KEGG: dau:Daud_0321 integrase catalytic subunit; PFAM: Integrase catalytic region; SPTR: Integrase, catalytic region.
       0.403
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.