STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (397 aa)    
Predicted Functional Partners:
Tlie_0203
Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
   
 0.964
Tlie_1703
PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate butyryltransferase; COGs: COG0280 Phosphotransacetylase; InterPro IPR002505: IPR012147; KEGG: aco:Amico_1841 phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase; PRIAM: Phosphate butyryltransferase; SPTR: Phosphate butyryltransferase.
 
 
 0.936
Tlie_1406
CoA-binding domain protein; PFAM: CoA binding domain; COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR003781: IPR013650: IPR011761; KEGG: tai:Taci_1407 CoA-binding domain protein; PFAM: CoA-binding domain protein; ATP-grasp domain protein; SPTR: Acetyl-CoA synthetase / acetyltransferase family protein.
    
 0.915
Tlie_1167
PFAM: Acylphosphatase; COGs: COG1254 Acylphosphatase; InterPro IPR017968: IPR020456: IPR001792; KEGG: pfu:PF0283 acylphosphatase; PFAM: acylphosphatase; SPTR: Acylphosphatase.
     
 0.911
Tlie_1702
PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate butyryltransferase; COGs: COG0280 Phosphotransacetylase; InterPro IPR014079: IPR002505: IPR012147; KEGG: tai:Taci_0453 phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase; SPTR: Phosphate butyryltransferase; TIGRFAM: phosphate butyryltransferase.
 
  
 0.879
Tlie_1108
Protein of unknown function DUF177; PFAM: Uncharacterized ACR, COG1399; COGs: COG1399 metal-binding possibly nucleic acid-binding protein; InterPro IPR003772; KEGG: aco:Amico_1070 protein of unknown function DUF177; PFAM: protein of unknown function DUF177; SPTR: Putative uncharacterized protein.
  
    0.786
rpmF
PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; COGs: COG0333 Ribosomal protein L32; InterPro IPR002677; KEGG: tai:Taci_1103 ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
  
 0.745
tmcAL
Protein of unknown function DUF795; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
       0.643
Tlie_1286
Betaine reductase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: tai:Taci_1135 betaine reductase; SPTR: Betaine reductase.
    
 0.583
Tlie_1285
PFAM: Fatty acid synthesis protein; COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; InterPro IPR003664: IPR012116; KEGG: aco:Amico_1391 fatty acid synthesis PlsX protein; PFAM: fatty acid synthesis plsX protein; SPTR: Fatty acid synthesis plsX protein.
  
 
 0.580
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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