STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1189Hypothetical protein; PFAM: Bacterial cellulose synthase subunit; KEGG: bsu:BSU04310 putative regulator; SPTR: Uncharacterized protein ydaN. (699 aa)    
Predicted Functional Partners:
Tlie_1188
KEGG: spu:588077 hypothetical LOC588077.
       0.773
Tlie_1190
GrdX protein; KEGG: cpo:COPRO5265_0212 GrdX protein; SPTR: GrdX protein.
       0.773
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.531
Tlie_1191
TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro IPR010187; KEGG: tai:Taci_1136 selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; SPTR: Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family.
       0.495
Tlie_1192
PFAM: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro IPR010187; KEGG: chy:CHY_2393 glycine reductase, selenoprotein B; SPTR: Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family.
       0.447
Tlie_1193
PFAM: Glycine/sarcosine/betaine reductase component B subunits; InterPro IPR016585: IPR015417; KEGG: tai:Taci_1138 glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; PFAM: Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; SPTR: Sarcosine reductase.
       0.432
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.