STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1202PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; COGs: COG3262 Ni Fe-hydrogenase III component G; InterPro IPR001268; KEGG: aco:Amico_1265 NADH dehydrogenase (ubiquinone) 30 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: NADH dehydrogenase (Ubiquinone) 30 kDa subunit. (183 aa)    
Predicted Functional Partners:
Tlie_1203
PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; COGs: COG3260 Ni Fe-hydrogenase III small subunit; InterPro IPR006137; KEGG: aco:Amico_1266 NADH ubiquinone oxidoreductase 20 kDa subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; SPTR: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
 
 0.996
Tlie_1200
PFAM: NADH dehydrogenase; COGs: COG0650 Formate hydrogenlyase subunit 4; InterPro IPR001694; KEGG: aco:Amico_1263 respiratory-chain NADH dehydrogenase subunit 1; PFAM: respiratory-chain NADH dehydrogenase subunit 1; SPTR: Respiratory-chain NADH dehydrogenase subunit 1.
 
 
 0.992
Tlie_1205
PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR003916: IPR001750; KEGG: aco:Amico_1268 NADH/ubiquinone/plastoquinone (complex I); PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH/Ubiquinone/plastoquinone (Complex I).
 
 
 0.979
Tlie_1199
PFAM: 4Fe-4S binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR017900: IPR017896; KEGG: aco:Amico_1262 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 0.955
Tlie_1201
NADH-ubiquinone oxidoreductase chain 49kDa; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Nickel-dependent hydrogenase; COGs: COG3261 Ni Fe-hydrogenase III large subunit; InterPro IPR020845: IPR018194: IPR001501: IPR001135; KEGG: aco:Amico_1264 NADH dehydrogenase (quinone); PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; nickel-dependent hydrogenase large subunit; SPTR: Carbon monoxide-induced hydrogenase, large subunit.
 
     0.941
Tlie_1208
KEGG: aco:Amico_1271 putative multicomponent Na+-H+ antiporter subunit A; SPTR: pH adaptation potassium efflux system protein B1 sodium-potassium/hydrogen antiporter subunit B1.
 
     0.902
Tlie_1207
Membrane bound hydrogenase subunit mbhF; PFAM: Domain related to MnhB subunit of Na+/H+ antiporter; InterPro IPR007182; KEGG: mhu:Mhun_2584 putative monovalent cation/H+ antiporter subunit B; PFAM: Na+/H+ antiporter MnhB subunit-related protein; SPTR: Membrane bound hydrogenase, MbhF subunit.
 
     0.889
Tlie_1209
Membrane bound hydrogenase subunit mbhD; KEGG: aco:Amico_1272 putative monovalent cation/H+ antiporter subunit B; SPTR: Putative monovalent cation/H+ antiporter subunit B.
 
     0.889
Tlie_1211
Membrane bound hydrogenase subunit mbhB; PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro IPR007208; KEGG: aco:Amico_1274 multiple resistance and pH regulation protein F; PFAM: multiple resistance and pH regulation protein F; SPTR: Multiple resistance and pH regulation protein F.
 
     0.863
Tlie_1210
PFAM: Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; COGs: COG1320 Multisubunit Na+/H+ antiporter MnhG subunit; InterPro IPR005133; KEGG: aco:Amico_1273 monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; SPTR: Monovalent cation/proton antiporter, MnhG/PhaG subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit.
 
     0.856
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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