STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1217PFAM: Sodium:solute symporter family; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: tai:Taci_1432 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; manually curated; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (492 aa)    
Predicted Functional Partners:
Tlie_1216
Amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase; COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR002933: IPR011650: IPR010168: IPR017439; KEGG: tai:Taci_1431 amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: Amidohydrolase; TIGRFAM: amidohydrolase.
  
    0.791
Tlie_1218
PFAM: Protein of unknown function (DUF3311); KEGG: tai:Taci_1433 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.786
Tlie_0285
PFAM: Sodium:solute symporter family; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: amt:Amet_2980 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
     0.702
Tlie_1364
PFAM: Carbon starvation protein CstA; COGs: COG1966 Carbon starvation protein predicted membrane protein; InterPro IPR001917: IPR003706; KEGG: aco:Amico_1452 carbon starvation protein CstA; PFAM: carbon starvation protein CstA; SPTR: Carbon starvation protein CstA.
  
    0.591
Tlie_0209
PFAM: Aldehyde dehydrogenase family; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590: IPR012408; KEGG: tjr:TherJR_0630 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: CoA-dependent propionaldehyde dehydrogenase.
  
  
 0.549
Tlie_0177
PFAM: GGDEF domain; KEGG: tai:Taci_0166 response regulator receiver protein; SPTR: Response regulator receiver protein.
  
    0.536
Tlie_1598
PFAM: Sodium:solute symporter family; COGs: COG4145 Na+/panthothenate symporter; InterPro IPR001734; KEGG: dds:Ddes_1291 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
   
 0.527
corA
Magnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
       0.447
Tlie_0064
Putative PAS/PAC sensor protein; PFAM: HD domain; PAS fold; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: PAS domain S-box; uncharacterized domain HDIG; COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterProIPR001638: IPR000014: IPR003607: IPR006675: IPR 013656: IPR006674; KEGG: tle:Tlet_1338 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; extracellular solute-binding protein family 3; PAS fold-4 domain protein; SMART: extracellular solute-binding protein family 3; PAS domain c [...]
  
 
 0.426
Tlie_0249
PFAM: Citrate synthase; COGs: COG0372 Citrate synthase; InterPro IPR002020; KEGG: tai:Taci_0447 citrate synthase-like protein; PFAM: Citrate synthase; SPTR: Citrate synthase-like protein.
   
  
 0.408
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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