STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1279PFAM: Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: slp:Slip_1460 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Putative ferric ion ABC transporter. (299 aa)    
Predicted Functional Partners:
Tlie_1548
Transport system permease protein; PFAM: FecCD transport family; COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dps:DP0215 Fe(III) ABC-transporter, permease protein; PFAM: transport system permease protein; SPTR: Probable Fe(III) ABC-transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.985
Tlie_1751
Transport system permease protein; PFAM: FecCD transport family; COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: mac:MA0951 hemin permease; PFAM: transport system permease protein; SPTR: Hemin permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.982
Tlie_1547
PFAM: ABC transporter; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439: IPR017871: IPR003593; KEGG: rci:RRC303 ABC-type transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Iron(III) dicitrate transport ATP-binding protein FecE.
 
 
 0.963
Tlie_1750
PFAM: ABC transporter; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439: IPR017871: IPR003593; KEGG: dde:Dde_1624 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ATPase; manually curated.
 
 
 0.937
Tlie_1280
Outer membrane transport energization protein ExbB (TC 2.C.1.1.1); PFAM: MotA/TolQ/ExbB proton channel family; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: aco:Amico_0339 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: MotA/TolQ/ExbB proton channel.
 
  
 0.868
Tlie_1277
Outer membrane transport energization protein TonB (TC 2.C.1.1.1); PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR003538: IPR006260; KEGG: vfm:VFMJ11_1305 TonB protein; PFAM: TonB domain; SPTR: Putative uncharacterized protein; TIGRFAM: TonB family protein.
 
  
 0.862
Tlie_1278
PFAM: Biopolymer transport protein ExbD/TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: aco:Amico_0338 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: TolR protein.
  
  
 0.836
Tlie_1281
Transketolase domain-containing protein; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; COGs: COG0021 Transketolase; InterPro IPR005474: IPR005475: IPR005476; KEGG: aco:Amico_1388 transketolase central region; PFAM: Transketolase domain-containing protein; Transketolase central region; SPTR: Transketolase central region.
       0.686
Tlie_1282
PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase; COGs: COG0686 Alanine dehydrogenase; InterPro IPR007886: IPR007698: IPR008141; KEGG: tai:Taci_1131 alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; SPTR: Alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; Belongs to the AlaDH/PNT family.
       0.491
Tlie_1276
Metal dependent phosphohydrolase; PFAM: HD domain; COGs: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; InterPro IPR003018: IPR006674: IPR003607; KEGG: tai:Taci_0059 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase.
       0.471
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.