STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1285PFAM: Fatty acid synthesis protein; COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; InterPro IPR003664: IPR012116; KEGG: aco:Amico_1391 fatty acid synthesis PlsX protein; PFAM: fatty acid synthesis plsX protein; SPTR: Fatty acid synthesis plsX protein. (383 aa)    
Predicted Functional Partners:
Tlie_1286
Betaine reductase; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: tai:Taci_1135 betaine reductase; SPTR: Betaine reductase.
  
 0.998
Tlie_1102
(Acyl-carrier-protein) S-malonyltransferase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR004410: IPR014043; KEGG: tai:Taci_1098 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; SPTR: Malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase.
  
  
 0.811
Tlie_1292
GrdX protein; KEGG: aco:Amico_1399 GrdX protein; SPTR: GrdX protein.
 
   
 0.798
Tlie_1290
PFAM: Glycine/sarcosine/betaine reductase component B subunits; InterPro IPR015417: IPR016585; KEGG: tai:Taci_1138 glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; PFAM: Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; SPTR: Glycine reductase, subunit ABC.
 
   
 0.796
rpmF
PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; COGs: COG0333 Ribosomal protein L32; InterPro IPR002677; KEGG: tai:Taci_1103 ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
  
 0.795
Tlie_1192
PFAM: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro IPR010187; KEGG: chy:CHY_2393 glycine reductase, selenoprotein B; SPTR: Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family.
 
   
 0.795
Tlie_1457
TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro IPR010187; KEGG: clj:CLJU_c27350 glycine reductase complex component B subunit gamma; SPTR: Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family.
 
   
 0.795
Tlie_1288
PFAM: Glycine reductase complex selenoprotein A; InterPro IPR006812; KEGG: aco:Amico_1395 glycine reductase complex selenoprotein A; PFAM: glycine reductase complex selenoprotein A; SPTR: Glycine reductase, A.
 
   
 0.794
Tlie_1460
PFAM: Glycine reductase complex selenoprotein A; InterPro IPR006812; KEGG: aco:Amico_1395 glycine reductase complex selenoprotein A; PFAM: glycine reductase complex selenoprotein A; SPTR: Glycine reductase, A.
 
   
 0.794
Tlie_1193
PFAM: Glycine/sarcosine/betaine reductase component B subunits; InterPro IPR016585: IPR015417; KEGG: tai:Taci_1138 glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; PFAM: Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; SPTR: Sarcosine reductase.
 
   
 0.793
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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