STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1335Amino acid/amide ABC transporter membrane protein 1, HAAT family; PFAM: Branched-chain amino acid transport system / permease component; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: dma:DMR_05870 ABC transporter permease protein; PFAM: inner-membrane translocator; SPTR: ABC transporter permease protein. (297 aa)    
Predicted Functional Partners:
Tlie_1334
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: Branched-chain amino acid transport system / permease component; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: tai:Taci_0637 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator.
 
 0.999
Tlie_0693
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: Branched-chain amino acid transport system / permease component; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: aco:Amico_0157 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator.
 
 0.998
Tlie_1021
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: Branched-chain amino acid transport system / permease component; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: tai:Taci_1395 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator.
 
 0.998
Tlie_1333
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR018170: IPR003439: IPR003593; KEGG: aco:Amico_1430 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein.
 
 0.997
Tlie_1332
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871: IPR003439: IPR003593; KEGG: tai:Taci_0639 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: High affinity branched-chain amino acid ABC transporter, ATP-binding protein.
 
 0.994
Tlie_0692
PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003439: IPR003593; KEGG: tai:Taci_0684 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein.
 
 0.986
Tlie_1020
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593: IPR003439; KEGG: tai:Taci_1394 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein.
 
 0.985
Tlie_0695
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Receptor family ligand binding region; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828: IPR000709; KEGG: aco:Amico_0155 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor.
 
 
 0.984
Tlie_1018
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Receptor family ligand binding region; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709: IPR001828; KEGG: tai:Taci_1392 extracellular ligand-binding receptor; PFAM: Extracellular ligand-binding receptor; SPTR: Extracellular ligand-binding receptor.
 
 0.984
Tlie_0691
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR017871: IPR003439: IPR003593; KEGG: aco:Amico_0159 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein.
 
 0.968
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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