STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1393KEGG: pth:PTH_2566 hypothetical protein; SPTR: Putative uncharacterized protein. (136 aa)    
Predicted Functional Partners:
Tlie_1392
PFAM: Transposase, Mutator family; COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: gwc:GWCH70_1766 transposase mutator type; PFAM: transposase mutator type; SPTR: Transposase mutator type.
       0.523
Tlie_1394
3H domain-containing protein; PFAM: HTH domain; 3H domain; COGs: COG1827 small molecule binding protein (contains 3H domain); InterPro IPR004173; KEGG: tna:CTN_0856 3H domain protein; PFAM: 3H domain-containing protein; SPTR: 3H domain protein.
       0.519
Tlie_1395
KEGG: tag:Tagg_0250 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.476
Tlie_1396
PFAM: Sodium:solute symporter family; COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: oih:OB2242 pantothenate permease; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.476
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.