STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1409Hypothetical protein; KEGG: ske:Sked_17430 CDP-diacylglycerol inositol 3-phosphatidyltransferase; SPTR: CDP-diacylglycerol inositol 3-phosphatidyltransferase. (80 aa)    
Predicted Functional Partners:
Tlie_1410
PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase F; COGs: COG1164 Oligoendopeptidase F; InterPro IPR013647: IPR001567: IPR004438; KEGG: cth:Cthe_2452 oligopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; SPTR: Oligopeptidase F. Metallo peptidase. MEROPS family M03B; TIGRFAM: oligoendopeptidase F.
       0.615
Tlie_1408
ErfK/YbiS/YcfS/YnhG family protein; PFAM: L,D-transpeptidase catalytic domain; COGs: COG1376 conserved hypothetical protein; InterPro IPR005490; KEGG: aco:Amico_0482 ErfK/YbiS/YcfS/YnhG family protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: ErfK/YbiS/YcfS/YnhG family protein.
       0.534
Tlie_1407
PFAM: Iron-containing alcohol dehydrogenase; COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR018211: IPR001670; KEGG: pth:PTH_0851 alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Alcohol dehydrogenase.
       0.466
plsY
Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
       0.406
Tlie_1406
CoA-binding domain protein; PFAM: CoA binding domain; COGs: COG1042 Acyl-CoA synthetase (NDP forming); InterPro IPR003781: IPR013650: IPR011761; KEGG: tai:Taci_1407 CoA-binding domain protein; PFAM: CoA-binding domain protein; ATP-grasp domain protein; SPTR: Acetyl-CoA synthetase / acetyltransferase family protein.
       0.406
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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