STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1482PFAM: Uncharacterised protein family UPF0066; TIGRFAM: putative methyltransferase, YaeB/AF_0241 family; COGs: COG1720 conserved hypothetical protein; InterPro IPR001378; KEGG: acp:A2cp1_1052 protein of unknown function UPF0066; PFAM: Uncharacterised protein family UPF0066; SPTR: Class II aldolase/adducin family protein. (147 aa)    
Predicted Functional Partners:
Tlie_1481
Protein of unknown function DUF2284, metal-binding protein; PFAM: Predicted metal-binding protein (DUF2284); COGs: COG5423 metal-binding protein; InterPro IPR019271; KEGG: gsu:GSU0751 hypothetical protein; PFAM: Protein of unknown function DUF2284, metal-binding; SPTR: Putative uncharacterized protein.
       0.705
crcB
Camphor resistance protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.520
Tlie_1484
Protein of unknown function DUF190; PFAM: Uncharacterized ACR, COG1993; COGs: COG1993 conserved hypothetical protein; InterPro IPR003793; KEGG: nwa:Nwat_2116 hypothetical protein; PFAM: protein of unknown function DUF190; SPTR: Putative uncharacterized protein.
       0.492
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.