STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1503Integrase catalytic region; PFAM: Integrase core domain; InterPro IPR001584; KEGG: adg:Adeg_1238 integrase catalytic region; PFAM: Integrase catalytic region; SPTR: Integrase catalytic region. (392 aa)    
Predicted Functional Partners:
Tlie_1504
PFAM: NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain; InterPro IPR003421; KEGG: aco:Amico_1250 NAD/NADP octopine/nopaline dehydrogenase; PFAM: NAD/NADP octopine/nopaline dehydrogenase; SPTR: NAD/NADP octopine/nopaline dehydrogenase.
       0.510
Tlie_1505
PFAM: Bacterial extracellular solute-binding protein, family 7; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: dps:DP0483 DctP (periplasmic C4-dicarboxylate binding protein); PFAM: Extracellular solute-binding protein, family 7; SPTR: Probable DctP (Periplasmic C4-dicarboxylate binding protein).
       0.420
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.