STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1571Hypothetical protein; COGs: COG3359 exonuclease; KEGG: bmq:BMQ_1429 hypothetical protein; SPTR: Putative exonuclease. (399 aa)    
Predicted Functional Partners:
Tlie_1570
DEAD/DEAH box helicase domain protein; PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase; COGs: COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster; InterProIPR014021: IPR001650: IPR011545: IPR018973: IPR 014001; KEGG: gwc:GWCH70_1910 DEAD/DEAH box helicase domain protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; Protein of unknown function DUF1998; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent helicase, DEAD/DEAH box fami [...]
 
  
 0.946
Tlie_1567
Citrate lyase acyl carrier protein; PFAM: Malonate decarboxylase delta subunit (MdcD); TIGRFAM: citrate lyase acyl carrier protein; InterPro IPR006495; KEGG: tai:Taci_1369 citrate lyase acyl carrier protein; SPTR: Citrate lyase acyl carrier protein.
       0.591
Tlie_1568
Citryl-CoA lyase; PFAM: HpcH/HpaI aldolase/citrate lyase family; TIGRFAM: citrate lyase, beta subunit; COGs: COG2301 Citrate lyase beta subunit; InterPro IPR005000: IPR011206; KEGG: tai:Taci_1370 citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; PRIAM: Citryl-CoA lyase; SPTR: Citrate (Pro-3S)-lyase; Belongs to the HpcH/HpaI aldolase family.
       0.591
Tlie_1569
PFAM: Citrate lyase, alpha subunit (CitF); TIGRFAM: citrate lyase, alpha subunit; COGs: COG3051 Citrate lyase alpha subunit; InterPro IPR006472; KEGG: tai:Taci_1371 citrate lyase, alpha subunit; PFAM: Citrate lyase alpha subunit; PRIAM: Citrate CoA-transferase; SPTR: Citrate lyase, alpha subunit; TIGRFAM: citrate lyase, alpha subunit.
       0.591
Tlie_1572
Phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; COGs: COG1109 Phosphomannomutase; InterProIPR005844: IPR005845: IPR005846: IPR005843: IPR 005841: IPR016066; KEGG: aco:Amico_0419 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/p [...]
       0.583
Tlie_1566
PFAM: Isocitrate/isopropylmalate dehydrogenase; COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR001804: IPR019818; KEGG: tai:Taci_1368 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase.
       0.439
Tlie_0705
COGs: COG2339 membrane protein; KEGG: bbe:BBR47_24360 hypothetical protein; SPTR: Conserved hypothetical membrane protein.
  
     0.425
Tlie_1561
Metal dependent phosphohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG; InterPro IPR006675: IPR006674; KEGG: tai:Taci_1363 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase.
 
     0.408
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.