STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1632PFAM: Patatin-like phospholipase; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: pca:Pcar_0066 alpha-beta hydrolase family esterase; PFAM: Patatin; SPTR: Predicted esterase of the alpha-beta hydrolase superfamily. (300 aa)    
Predicted Functional Partners:
Tlie_1631
PFAM: Polysaccharide deacetylase; COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509: IPR010916; KEGG: tte:TTE0866 xylanase/chitin deacetylase; PFAM: polysaccharide deacetylase; SPTR: Predicted xylanase/chitin deacetylase.
       0.623
Tlie_0545
PFAM: Surface antigen variable number repeat; Surface antigen; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184; KEGG: aco:Amico_1507 surface antigen (D15); PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: Membrane protein, OMP85 family.
 
 
  
 0.609
Tlie_1630
PFAM: Cupin domain; InterPro IPR013096; KEGG: hmo:HM1_2283 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Mannose-6-phosphate isomerase.
  
    0.608
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.