STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1644PFAM: ABC transporter; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: aco:Amico_0063 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Metal ABC transporter, nickel uptake transporter family, ATP-binding protein. (225 aa)    
Predicted Functional Partners:
Tlie_1643
PFAM: Cobalt transport protein; TIGRFAM: cobalt ABC transporter, permease protein CbiQ; COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR012809: IPR003339; KEGG: aco:Amico_0064 cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; SPTR: Cobalt ABC transporter, permease protein CbiQ; TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ.
 
 0.999
Tlie_1641
Cobalamin (vitamin B12) biosynthesis CbiM protein; PFAM: Cobalt uptake substrate-specific transmembrane region; COGs: COG0310 ABC-type Co2+ transport system permease component; InterPro IPR002751; KEGG: aco:Amico_0066 cobalamin (vitamin B12) biosynthesis CbiM protein; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; SPTR: Cobalamin (Vitamin B12) biosynthesis CbiM protein.
 
 0.997
Tlie_0679
PFAM: Cobalt transport protein; COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: aco:Amico_0660 cobalt transport protein; PFAM: cobalt transport protein; SPTR: Cobalt transport protein.
 
 0.994
Tlie_1640
PFAM: Nickel uptake substrate-specific transmembrane region; COGs: COG5266 ABC-type Co2+ transport system periplasmic component; InterPro IPR019613; KEGG: aco:Amico_0067 nickel transport complex, NikM subunit, transmembrane; PFAM: Nickel transport complex, NikM subunit, transmembrane; SPTR: Putative lipoprotein.
 
  
 0.990
Tlie_1639
Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sat:SYN_01995 export ABC transporter permease protein; PFAM: protein of unknown function DUF214; SPTR: Export ABC transporter permease protein.
 
    0.951
Tlie_1642
KEGG: aco:Amico_0065 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.951
Tlie_1870
PFAM: BioY family; COGs: COG1268 conserved hypothetical protein; InterPro IPR003784; KEGG: aco:Amico_1847 BioY protein; PFAM: BioY protein; SPTR: BioY protein.
   
 
 0.872
Tlie_0440
PFAM: ABC transporter; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593: IPR017871; KEGG: tte:TTE1863 ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Bacitracin transport ATP-binding protein BcrA.
 
   
0.815
Tlie_0577
PFAM: Protein of unknown function (DUF1393); COGs: COG4720 membrane protein; KEGG: aco:Amico_1479 protein of unknown function DUF1393; SPTR: Putative uncharacterized protein.
   
 
 0.712
Tlie_1638
PFAM: ABC transporter; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: ate:Athe_1574 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related.
 
   
0.586
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.