STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1691PFAM: Peptidase dimerisation domain; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; KEGG: aco:Amico_0203 peptidase M20; SPTR: Peptidase M20. (397 aa)    
Predicted Functional Partners:
Tlie_1473
Acetylornithine deacetylase, N2-acetyl-L-lysine deacetylase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933: IPR010175; KEGG: tai:Taci_0451 N-acetyl-ornithine/N-acetyl-lysine deacetylase; PFAM: peptidase M20; SPTR: Acetylornithine deacetylase; TIGRFAM: N-acetyl-ornithine/N-acetyl-lysine deacetylase.
  
     0.721
Tlie_1692
PFAM: Amidohydrolase family; COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: aco:Amico_1758 amidohydrolase 3; PFAM: Amidohydrolase 3; SPTR: Amidohydrolase 3.
       0.711
Tlie_1690
PFAM: Cupin domain; InterPro IPR013096; KEGG: rbi:RB2501_09765 possible pectin degradation protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Possible pectin degradation protein.
  
    0.671
Tlie_1689
Hypothetical protein; KEGG: dpo:Dpse_GA25375 GA25375 gene product from transcript GA25375-RA; SPTR: Putative uncharacterized protein.
       0.611
Tlie_1732
Pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme; COGs: COG0031 Cysteine synthase; InterPro IPR001926; KEGG: aco:Amico_0198 pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit.
 
   
 0.478
Tlie_0010
D-aminoacylase domain protein; PFAM: D-aminoacylase, C-terminal region; Amidohydrolase family; COGs: COG3653 N-acyl-D-aspartate/D-glutamate deacylase; InterPro IPR006680: IPR012855; KEGG: nth:Nther_1852 D-aminoacylase domain protein; PFAM: D-aminoacylase domain protein; amidohydrolase; SPTR: D-aminoacylase; manually curated.
 
    0.458
Tlie_1693
PFAM: Bacterial extracellular solute-binding protein, family 7; COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: aco:Amico_1691 extracellular solute-binding protein, family 7; PFAM: Extracellular solute-binding protein, family 7; SPTR: Extracellular solute-binding protein, family 7.
       0.442
Tlie_1688
PFAM: Uncharacterised protein family (UPF0261); COGs: COG5441 conserved hypothetical protein; InterPro IPR008322: IPR003006; KEGG: rhi:NGR_a02150 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033271; SPTR: Putative uncharacterized protein; Belongs to the UPF0261 family.
       0.430
Tlie_1686
PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative; COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006056: IPR006175: IPR019897; KEGG: pfu:PF0668 hypothetical protein; PFAM: Endoribonuclease L-PSP; SPTR: Putative uncharacterized protein; TIGRFAM: endoribonuclease L-PSP.
  
    0.425
Tlie_1687
PFAM: TIM-barrel signal transduction protein; COGs: COG5564 TIM-barrel protein possibly a dioxygenase; InterPro IPR009215; KEGG: rle:pRL90195 hypothetical protein; PFAM: TIM-barrel signal transduction protein; SPTR: Putative uncharacterized protein.
       0.409
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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