STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1713PFAM: Predicted membrane protein (DUF2207); KEGG: ddf:DEFDS_1130 hypothetical protein; SPTR: Putative uncharacterized protein. (305 aa)    
Predicted Functional Partners:
Tlie_1714
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG3290 Signal transduction histidine kinase regulating citrate/malate metabolism; InterProIPR005467: IPR000014: IPR013767: IPR003594: IPR 004358; KEGG: pth:PTH_1349 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; SPTR: Signal transduction histidine kinase regulating citrate/malate metabolism.
       0.615
Tlie_1715
PFAM: HTH domain; Response regulator receiver domain; COGs: COG4565 Response regulator of citrate/malate metabolism; InterPro IPR001789; KEGG: aco:Amico_0175 response regulator receiver and unknown domain protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Putative uncharacterized protein.
       0.615
Tlie_1712
PFAM: Ornithine cyclodeaminase/mu-crystallin family; TIGRFAM: 2,3-diaminopropionate biosynthesis protein SbnB; COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR003462; KEGG: aco:Amico_1535 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin; PRIAM: Ornithine cyclodeaminase; SPTR: Ornithine cyclodeaminase.
       0.452
Tlie_1709
PFAM: Domain of unknown function (DUF1850); InterPro IPR015001; KEGG: aco:Amico_1805 domain of unknown function DUF1850; PFAM: Domain of unknown function DUF1850; SPTR: Putative uncharacterized protein.
       0.403
Tlie_1710
PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; InterPro IPR011853: IPR010656; KEGG: aco:Amico_1804 TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein.
       0.403
Tlie_1711
PFAM: NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR011128: IPR003421; KEGG: aco:Amico_1803 NAD/NADP octopine/nopaline dehydrogenase; PFAM: NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; SPTR: NAD/NADP octopine/nopaline dehydrogenase.
       0.403
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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