STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1750PFAM: ABC transporter; COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003439: IPR017871: IPR003593; KEGG: dde:Dde_1624 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ATPase; manually curated. (250 aa)    
Predicted Functional Partners:
Tlie_1751
Transport system permease protein; PFAM: FecCD transport family; COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: mac:MA0951 hemin permease; PFAM: transport system permease protein; SPTR: Hemin permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.998
Tlie_1752
PFAM: Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: dsa:Desal_0075 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Periplasmic binding protein.
 
 
 0.995
Tlie_1548
Transport system permease protein; PFAM: FecCD transport family; COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: dps:DP0215 Fe(III) ABC-transporter, permease protein; PFAM: transport system permease protein; SPTR: Probable Fe(III) ABC-transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.993
Tlie_1279
PFAM: Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: slp:Slip_1460 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Putative ferric ion ABC transporter.
 
 
 0.937
Tlie_0677
PFAM: ABC transporter; Cobalt ATP-binding cassette C terminal; TIGRFAM: cobalt transport protein ATP-binding subunit; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR017871: IPR003439: IPR003593; KEGG: tai:Taci_1153 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein.
    
0.896
Tlie_0348
PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterProIPR003439: IPR013563: IPR003593: IPR010066: IPR 017871; KEGG: aco:Amico_1781 ABC transporter related protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: Dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subu [...]
 
    
0.886
Tlie_1639
Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sat:SYN_01995 export ABC transporter permease protein; PFAM: protein of unknown function DUF214; SPTR: Export ABC transporter permease protein.
 
  
 0.726
Tlie_0301
PFAM: Prokaryotic dksA/traR C4-type zinc finger; FmdE, Molybdenum formylmethanofuran dehydrogenase operon; COGs: COG2191 Formylmethanofuran dehydrogenase subunit E; InterPro IPR003814; KEGG: aco:Amico_0056 formylmethanofuran dehydrogenase subunit E region; PFAM: formylmethanofuran dehydrogenase subunit E region; SPTR: Putative tungsten formylmethanofuran dehydrogenase, subunit E.
 
    0.698
Tlie_1799
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: rxy:Rxyl_1174 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component.
 
 
  
 0.471
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.462
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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