Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Tlie_1789 | Tlie_1790 | PFAM: Major Facilitator Superfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701: IPR000917; KEGG: net:Neut_0214 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; manually curated. | Protein of unknown function DUF125 transmembrane; PFAM: VIT family; Rubrerythrin; COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: tna:CTN_0174 hypothetical protein; PFAM: protein of unknown function DUF125 transmembrane; SPTR: Rubrerythrin family protein. | 0.550 |
Tlie_1789 | Tlie_1791 | PFAM: Major Facilitator Superfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701: IPR000917; KEGG: net:Neut_0214 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; manually curated. | PFAM: Nitroreductase family; COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: aco:Amico_0362 nitroreductase; PFAM: nitroreductase; SPTR: Nitroreductase. | 0.489 |
Tlie_1790 | Tlie_1789 | Protein of unknown function DUF125 transmembrane; PFAM: VIT family; Rubrerythrin; COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: tna:CTN_0174 hypothetical protein; PFAM: protein of unknown function DUF125 transmembrane; SPTR: Rubrerythrin family protein. | PFAM: Major Facilitator Superfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701: IPR000917; KEGG: net:Neut_0214 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; manually curated. | 0.550 |
Tlie_1790 | Tlie_1791 | Protein of unknown function DUF125 transmembrane; PFAM: VIT family; Rubrerythrin; COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: tna:CTN_0174 hypothetical protein; PFAM: protein of unknown function DUF125 transmembrane; SPTR: Rubrerythrin family protein. | PFAM: Nitroreductase family; COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: aco:Amico_0362 nitroreductase; PFAM: nitroreductase; SPTR: Nitroreductase. | 0.678 |
Tlie_1791 | Tlie_1789 | PFAM: Nitroreductase family; COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: aco:Amico_0362 nitroreductase; PFAM: nitroreductase; SPTR: Nitroreductase. | PFAM: Major Facilitator Superfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701: IPR000917; KEGG: net:Neut_0214 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; manually curated. | 0.489 |
Tlie_1791 | Tlie_1790 | PFAM: Nitroreductase family; COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: aco:Amico_0362 nitroreductase; PFAM: nitroreductase; SPTR: Nitroreductase. | Protein of unknown function DUF125 transmembrane; PFAM: VIT family; Rubrerythrin; COGs: COG1814 Uncharacterized membrane protein; InterPro IPR008217; KEGG: tna:CTN_0174 hypothetical protein; PFAM: protein of unknown function DUF125 transmembrane; SPTR: Rubrerythrin family protein. | 0.678 |