STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1794PFAM: ABC transporter; TIGRFAM: glycine betaine/L-proline transport ATP binding subunit; COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterProIPR005892: IPR003439: IPR000644: IPR017871: IPR 003593; KEGG: sth:STH2630 glycine betaine/carnitine/choline ABC transporter ATP-binding protein; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase; SPTR: Glycine betaine/carnitine/choline ABC transporter ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit. (377 aa)    
Predicted Functional Partners:
Tlie_1795
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: bcl:ABC1991 proline/glycine betaine ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Probable glycine betaine/carnitine/choline ABC transporter.
 0.997
Tlie_1796
PFAM: Substrate binding domain of ABC-type glycine betaine transport system; COGs: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); InterPro IPR007210; KEGG: ckr:CKR_2487 hypothetical protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SPTR: Putative uncharacterized protein.
 0.997
Tlie_0482
PFAM: Substrate binding domain of ABC-type glycine betaine transport system; COGs: COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein); InterPro IPR007210; KEGG: yen:YE2865 putative substrate-binding transport protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SPTR: Substrate-binding region of ABC-type glycine betaine transport system.
 0.989
Tlie_0485
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: bmj:BMULJ_05007 osmoprotectant transport system permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Putative ABC transporter system permease.
 0.989
Tlie_0483
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1174 ABC-type proline/glycine betaine transport systems permease component; InterPro IPR000515; KEGG: yen:YE2864 putative ABC transport integral membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component.
 0.988
Tlie_0484
PFAM: ABC transporter; CBS domain; COGs: COG1125 ABC-type proline/glycine betaine transport systems ATPase components; InterPro IPR003439: IPR000644: IPR003593: IPR017871; KEGG: tra:Trad_1572 glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Glycine betaine/L-proline ABC transporter, ATPase subunit.
  
  
 
0.910
Tlie_1639
Protein of unknown function DUF214; PFAM: Predicted permease; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: sat:SYN_01995 export ABC transporter permease protein; PFAM: protein of unknown function DUF214; SPTR: Export ABC transporter permease protein.
 
      0.899
Tlie_1792
Thiamine pyrophosphate TPP-binding domain-containing protein; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012001: IPR012000: IPR011766; KEGG: nth:Nther_1932 thiamine pyrophosphate protein TPP binding domain protein; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; SPTR: Thiamine pyrophosphate-dependent enzyme.
  
    0.778
hisC-2
PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR005861: IPR004839: IPR001917; KEGG: nth:Nther_1931 histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; SPTR: Histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
       0.773
Tlie_0350
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: aco:Amico_1779 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component.
 
      0.704
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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