STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1815PFAM: O-Antigen ligase; InterPro IPR007016; KEGG: cbe:Cbei_4628 hypothetical protein; PFAM: O-antigen polymerase; SPTR: Predicted protein. (421 aa)    
Predicted Functional Partners:
Tlie_1814
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sun:SUN_0100 glycosyl transferase; PFAM: glycosyl transferase group 1; SPTR: Putative uncharacterized protein.
 
  
 0.687
Tlie_1811
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: Bacterial sugar transferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: tte:TTE0665 lipopolysaccharide synthesis sugar transferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.672
Tlie_1812
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dtu:Dtur_0585 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; manually curated.
 
  
 0.665
Tlie_1827
PFAM: Polysaccharide biosynthesis protein; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: swo:Swol_0128 hypothetical protein; PFAM: polysaccharide biosynthesis protein CapD; SPTR: Putative uncharacterized protein.
  
  
 0.543
Tlie_1822
PFAM: Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: mpl:Mpal_0587 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein.
  
  
 0.493
Tlie_1823
Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: swo:Swol_0706 putative oxidoreductase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Putative oxidoreductase.
 
   
 0.487
Tlie_1813
PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: mmw:Mmwyl1_0835 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
     
 0.456
hisI
PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase; COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496: IPR008179: IPR021130; KEGG: aco:Amico_0677 phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase-like; SPTR: Phosphoribosyl-ATP diphosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; In the N-terminal section; belongs to the PRA-CH family.
  
  
 0.429
Tlie_1810
TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR020019: IPR001451; KEGG: tte:TTE0666 acetyltransferase; SPTR: Acetyltransferases (The isoleucine patch superfamily); TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family.
  
  
 0.424
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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