Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALO36321.1Toxin HigB-2; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)    
Predicted Functional Partners:
ALO36320.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.979
ALO34496.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.912
ALO34753.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.912
ALO36761.1
Cytoplasmic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.644
ALO36190.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.589
ALO33923.1
Antitoxin; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 0.572
CMT41_01250
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.534
ALO36322.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
       0.528
ALO36384.1
Txe/YoeB family addiction module toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.526
ALO34773.1
Antitoxin; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 0.514
Your Current Organism:
Colwellia sp. MT41
NCBI taxonomy Id: 58049
Other names: C. sp. MT41
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