STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM67761.1COG3188 P pilus assembly protein, porin PapC. (827 aa)    
Predicted Functional Partners:
EDM67762.1
COG3121 P pilus assembly protein, chaperone PapD.
 
 
 0.999
EDM67760.1
Hypothetical protein.
       0.773
EDM68684.1
Hypothetical protein.
   
    0.690
EDM67927.1
Putative NADH oxidase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
   
    0.689
leuS
COG0495 Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.595
hisI
Bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; COG0139 Phosphoribosyl-AMP cyclohydrolase; In the N-terminal section; belongs to the PRA-CH family.
   
  
 0.574
EDM65324.1
Hypothetical protein; COG5295 Autotransporter adhesin.
   
  
 0.558
EDM66646.1
Iron-regulated protein FrpC; COG5295 Autotransporter adhesin.
   
  
 0.558
EDM65959.1
Calcium binding hemolysin protein, putative; COG2931 RTX toxins and related Ca2+-binding proteins.
   
  
 0.558
EDM67763.1
COG5430 Uncharacterized secreted protein.
       0.514
Your Current Organism:
Moritella sp. PE36
NCBI taxonomy Id: 58051
Other names: M. sp. PE36
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