STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM68984.1Putative leucine-responsive regulatory protein; COG1522 Transcriptional regulators. (154 aa)    
Predicted Functional Partners:
EDM64865.1
Putative transcriptional regulator, AsnC family; COG1522 Transcriptional regulators.
  
     0.773
EDM66497.1
Transcriptional regulator of asparagine biosynthesis (AsnC family); COG1522 Transcriptional regulators.
  
     0.769
EDM68767.1
2-oxoglutarate ferredoxin oxidoreductase, alpha subunit; COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit.
    
  0.759
thiE
Putative phosphomethylpyrimidine kinase/thiamin-phosphatepyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
    
  0.734
EDM65311.1
Putative transcriptional regulator, AsnC family; COG1522 Transcriptional regulators.
  
     0.656
birA
Putative BirA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
   
 
 0.578
EDM68985.1
COG0700 Uncharacterized membrane protein.
       0.534
EDM68983.1
FMN reductase, NADPH-dependent; COG0431 Predicted flavoprotein.
       0.512
EDM66475.1
Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1.
     
 0.436
Your Current Organism:
Moritella sp. PE36
NCBI taxonomy Id: 58051
Other names: M. sp. PE36
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