STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM68206.1COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain. (251 aa)    
Predicted Functional Partners:
EDM66473.1
COG0642 Signal transduction histidine kinase.
   
 0.897
EDM66701.1
Sensor protein BarA; COG0642 Signal transduction histidine kinase.
   
 0.838
EDM65767.1
Putative two-component sensor; COG0642 Signal transduction histidine kinase.
   
 0.801
EDM66490.1
Chorismate mutase/prephenate dehydratase; COG1605 Chorismate mutase.
    
 0.786
EDM66491.1
Chorismate mutase/prephenate dehydrogenase; COG0287 Prephenate dehydrogenase.
    
 0.772
EDM66395.1
3-deoxy-7-phosphoheptulonate synthase.
    
 0.772
EDM68205.1
Hypothetical two-component sensor; COG0642 Signal transduction histidine kinase.
    
 0.737
EDM68454.1
PAS:GGDEF; COG2199 FOG: GGDEF domain.
    
  0.721
EDM65048.1
Sensory box sensor histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
  
 0.612
EDM64701.1
Sensory box sensor histidine kinase/response regulator; COG0591 Na+/proline symporter.
  
 0.612
Your Current Organism:
Moritella sp. PE36
NCBI taxonomy Id: 58051
Other names: M. sp. PE36
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