STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD04503.1CRISPR system Cascade subunit CasC. (449 aa)    
Predicted Functional Partners:
SDD04523.1
CRISPR system Cascade subunit CasB.
 
 
 0.998
SDD04568.1
CRISPR-associated endonuclease/helicase Cas3.
 
 
 0.998
SDD87736.1
CRISPR system Cascade subunit CasD.
 
 
 0.998
SDD04453.1
CRISPR system Cascade subunit CasE.
 
 
 0.997
SDD04543.1
CRISPR system Cascade subunit CasA.
 
 
 0.997
SDD87817.1
CRISPR-associated endonuclease/helicase Cas3.
 
 
 0.997
SDD87726.1
CRISPR system Cascade subunit CasE.
 
 
 0.988
SDD87796.1
CRISPR system Cascade subunit CasA.
 
 
 0.982
SDD87783.1
CRISPR system Cascade subunit CasA.
  
 
 0.964
SDD04479.1
CRISPR system Cascade subunit CasD.
 
     0.952
Your Current Organism:
Glycomyces harbinensis
NCBI taxonomy Id: 58114
Other names: ATCC 43155, DSM 46494, G. harbinensis, IFO 14487, JCM 7347, NBRC 14487, NRRL 15337, strain LL-DO5139
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.