STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD16850.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (217 aa)    
Predicted Functional Partners:
SDD91004.1
Signal transduction histidine kinase.
  
 0.927
SDD16877.1
Signal transduction histidine kinase.
 
   0.916
SDE24503.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  0.834
SDD09380.1
Signal transduction histidine kinase.
 
   0.808
SDD14759.1
Signal transduction histidine kinase.
  
   0.802
SDD76334.1
Signal transduction histidine kinase.
 
   0.795
SDD17063.1
Signal transduction histidine kinase.
 
   0.789
SDE56313.1
Signal transduction histidine kinase.
  
   0.778
SDE32104.1
Signal transduction histidine kinase.
 
   0.769
SDD61296.1
Signal transduction histidine kinase.
  
   0.759
Your Current Organism:
Glycomyces harbinensis
NCBI taxonomy Id: 58114
Other names: ATCC 43155, DSM 46494, G. harbinensis, IFO 14487, JCM 7347, NBRC 14487, NRRL 15337, strain LL-DO5139
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