STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE21228.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (225 aa)    
Predicted Functional Partners:
SDE21246.1
Signal transduction histidine kinase.
 
   0.932
SDD91004.1
Signal transduction histidine kinase.
  
 0.927
SDD14759.1
Signal transduction histidine kinase.
 
   0.806
SDD09380.1
Signal transduction histidine kinase.
 
   0.800
SDD76334.1
Signal transduction histidine kinase.
 
   0.795
SDE24503.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  0.789
SDD17063.1
Signal transduction histidine kinase.
 
   0.785
SDE49033.1
Signal transduction histidine kinase.
 
   0.766
SDD61296.1
Signal transduction histidine kinase.
  
   0.755
SDE56313.1
Signal transduction histidine kinase.
  
   0.740
Your Current Organism:
Glycomyces harbinensis
NCBI taxonomy Id: 58114
Other names: ATCC 43155, DSM 46494, G. harbinensis, IFO 14487, JCM 7347, NBRC 14487, NRRL 15337, strain LL-DO5139
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.