Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDD06419.1 | SDE23450.1 | SAMN05216270_101589 | SAMN05216270_11613 | Protein of unknown function. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.564 |
SDD21620.1 | SDE23450.1 | SAMN05216270_102360 | SAMN05216270_11613 | Mycothiol system anti-sigma-R factor. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.564 |
SDD48916.1 | SDE23432.1 | SAMN05216270_104219 | SAMN05216270_11612 | Hypothetical protein. | Hypothetical protein. | 0.612 |
SDD48916.1 | SDE23450.1 | SAMN05216270_104219 | SAMN05216270_11613 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.535 |
SDE23432.1 | SDD48916.1 | SAMN05216270_11612 | SAMN05216270_104219 | Hypothetical protein. | Hypothetical protein. | 0.612 |
SDE23432.1 | SDE23450.1 | SAMN05216270_11612 | SAMN05216270_11613 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.603 |
SDE23432.1 | SDE23473.1 | SAMN05216270_11612 | SAMN05216270_11614 | Hypothetical protein. | NADH dehydrogenase, FAD-containing subunit. | 0.409 |
SDE23432.1 | rpoA | SAMN05216270_11612 | SAMN05216270_103136 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.401 |
SDE23432.1 | rpoB | SAMN05216270_11612 | SAMN05216270_117112 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.764 |
SDE23432.1 | rpoC | SAMN05216270_11612 | SAMN05216270_117113 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.696 |
SDE23450.1 | SDD06419.1 | SAMN05216270_11613 | SAMN05216270_101589 | RNA polymerase sigma-70 factor, ECF subfamily. | Protein of unknown function. | 0.564 |
SDE23450.1 | SDD21620.1 | SAMN05216270_11613 | SAMN05216270_102360 | RNA polymerase sigma-70 factor, ECF subfamily. | Mycothiol system anti-sigma-R factor. | 0.564 |
SDE23450.1 | SDD48916.1 | SAMN05216270_11613 | SAMN05216270_104219 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.535 |
SDE23450.1 | SDE23432.1 | SAMN05216270_11613 | SAMN05216270_11612 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.603 |
SDE23450.1 | SDE23473.1 | SAMN05216270_11613 | SAMN05216270_11614 | RNA polymerase sigma-70 factor, ECF subfamily. | NADH dehydrogenase, FAD-containing subunit. | 0.628 |
SDE23450.1 | SDE23510.1 | SAMN05216270_11613 | SAMN05216270_11616 | RNA polymerase sigma-70 factor, ECF subfamily. | NADH dehydrogenase, FAD-containing subunit. | 0.580 |
SDE23450.1 | rpoA | SAMN05216270_11613 | SAMN05216270_103136 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.563 |
SDE23450.1 | rpoB | SAMN05216270_11613 | SAMN05216270_117112 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.632 |
SDE23450.1 | rpoC | SAMN05216270_11613 | SAMN05216270_117113 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.651 |
SDE23450.1 | rpoZ | SAMN05216270_11613 | SAMN05216270_106134 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.563 |
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